RnoEX6044396 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53161468-53167686:-
Coord C1 exon
chr13:53167593-53167686
Coord A exon
chr13:53165288-53165381
Coord C2 exon
chr13:53161468-53161502
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTCTTTTATTCTAGCTG
3' ss Score
8.2
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGTAATTATTTGGTGTTCATGGCAGAACTCTTCTGGTGGTTCGAAGTTGTGAAGCCTTCCTTTGTGCAGCCTCGTGTTGTCCGTCCACAAGGAG
Seq A exon
CTGAGCCTGCGAAAGACATGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACGTCCTGGATAGTTCTTCTAGTTCTGACTTCACCTCCAG
Seq C2 exon
ATATACACGTCCCCAAACTCATTCTTCAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'14-19,'14-16,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.219 C2=0.769
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(8.9=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAATTATTTGGTGTTCATGGCAGA
R:
TGAGACTGAAGAATGAGTTTGGGG
Band lengths:
128-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]