MmuEX6027785 @ mm10
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136283867-136287993:-
Coord C1 exon
chr1:136287900-136287993
Coord A exon
chr1:136285909-136286002
Coord C2 exon
chr1:136283867-136283901
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGTTTCATCTTTTATTTTAGCTG
3' ss Score
7.57
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGTAATTATTTGGTGTTCATGGCAGAACTCTTCTGGTGGTTTGAAGTTGTGAAGCCTTCATTTGTGCAGCCTCGTGTTGTCCGTCCACAAGGAG
Seq A exon
CTGAGCCTGCAAAAGACGTGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACATCCGGGATAGTTCATCTAGTTCTGACTTCTCCTCCAG
Seq C2 exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'19-29,'19-26,20-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.250 C2=1.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(8.5=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAATTATTTGGTGTTCATGGCAGA
R:
GAGGCTGAAGAATGAGTCTGCG
Band lengths:
127-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types