GgaEX0002632 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1386865-1390205:-
Coord C1 exon
chr8:1390112-1390205
Coord A exon
chr8:1389443-1389536
Coord C2 exon
chr8:1386865-1386935
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGTTCTTCTTGGCAGCTG
3' ss Score
10.58
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGTAACTACATGGTGTTCATGGCAGAACTGTTCTGGTGGTTTGAAGTGGTGAAACCATCATTTGTACAACCTCGTGTTGTTGGGCATCCCCAAG
Seq A exon
CTGAACCTGTAAAAGATGCAGCTTCTGCTCACAGTTTGAATGCTAACAGAAGAAATTATGTGGATGGCCCATGTGGTTCTGACTTCGTAGCCAG
Seq C2 exon
ATTGGAAAGTCCAAGTTATGCACCATCTCACCAACTGCATACGCCCCAGCAGCCTTATTCGTCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'10-16,'10-15,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.640
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(8.9=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTCATGGCAGAACTGT
R:
TGGGACAGACGAATAAGGCT
Band lengths:
154-248
Functional annotations
There are 0 annotated functions for this event