BtaEX6072157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014269 | SCARB1
Description
Bos taurus scavenger receptor class B, member 1 (SCARB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174597]
Coordinates
chr17:53252479-53262960:+
Coord C1 exon
chr17:53252479-53252597
Coord A exon
chr17:53258058-53258131
Coord C2 exon
chr17:53262909-53262960
Length
74 bp
Sequences
Splice sites
3' ss Seq
CACTGTGCTTGTTGCCGCAGGTC
3' ss Score
9.76
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGCGCCCTTGTTTCTCTCCCATCCTCACTTCTACAACGCTGACCCAGTCCTGGCAGAGGCAGTGTCTGGCCTCCATCCTAACCCAAAAGAACATTCCTTGTTCCTGGACATCCACCCG
Seq A exon
GTCACCGGAATCCCCATGAACTGCTCTGTGAAACTGCAGCTGAGCCTCTTCGTTAAGTCTGTGAAAGGCATCGG
Seq C2 exon
ACAAACTGGGAACATCCAGCCAGTGGTCCTGCCGCTAATGTGGTTCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014269-'19-17,'19-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(8.6=100)
A:
PF0113016=CD36=FE(5.3=100)
C2:
PF0113016=CD36=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTTGTTTCTCTCCCATC
R:
TCTTCGAACCACATTAGCGGC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]