HsaEX0056422 @ hg19
Exon Skipping
Gene
ENSG00000073060 | SCARB1
Description
scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:1664]
Coordinates
chr12:125271952-125284788:-
Coord C1 exon
chr12:125284670-125284788
Coord A exon
chr12:125279741-125279814
Coord C2 exon
chr12:125271952-125272003
Length
74 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTTGTTGCCGCAGGTC
3' ss Score
10
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGCCCCCTTGTTTCTCTCCCATCCTCACTTCCTCAACGCTGACCCGGTTCTGGCAGAAGCGGTGACTGGCCTGCACCCTAACCAGGAGGCACACTCCTTGTTCCTGGACATCCACCCG
Seq A exon
GTCACGGGAATCCCCATGAACTGCTCTGTGAAACTGCAGCTGAGCCTCTACATGAAATCTGTCGCAGGCATTGG
Seq C2 exon
ACAAACTGGGAAGATTGAGCCTGTGGTCCTGCCGCTGCTCTGGTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073060_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(11.9=100)
A:
PF0113016=CD36=FE(5.3=100)
C2:
PF0113016=CD36=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCCTTGTTTCTCTCC
R:
TGCAAACCAGAGCAGCGG
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)