GgaEX6013554 @ galGal4
Exon Skipping
Gene
ENSGALG00000003018 | SCARB1
Description
scavenger receptor class B, member 1 [Source:HGNC Symbol;Acc:HGNC:1664]
Coordinates
chr15:4516756-4519262:+
Coord C1 exon
chr15:4516756-4516874
Coord A exon
chr15:4518466-4518539
Coord C2 exon
chr15:4519211-4519262
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTTGGTCTCTTCCTATGCAGGTG
3' ss Score
9.71
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATGCACCAATGTTCATCTCCCACCCTCACTTCTACAATGCTGACCCAAGCCTGGTGGATGCTGTGGAAGGCCTGCACCCCAGCAGGGAGGAGCACGCGCTCTTCCTCGATGTGCACCCG
Seq A exon
GTGACAGGCATCCCCATGAACTGCTCCATCAAGCTCCAGCTGAACCAGTACATGAAGCAGGTGTCTGGTATCCT
Seq C2 exon
TCAAACAGGGAAGATTCAGCCTGTGGTGATGCCGCTGCTGTGGTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003018-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(8.6=100)
A:
PF0113016=CD36=FE(5.3=100)
C2:
PF0113016=CD36=FE(3.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCAATGTTCATCTCCCA
R:
TGCAAACCACAGCAGCGG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]