RnoEX0078359 @ rn6
Exon Skipping
Gene
ENSRNOG00000000981 | Scarb1
Description
scavenger receptor class B, member 1 [Source:RGD Symbol;Acc:2302]
Coordinates
chr12:36750222-36754273:+
Coord C1 exon
chr12:36750222-36750340
Coord A exon
chr12:36751212-36751285
Coord C2 exon
chr12:36754222-36754273
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTTTTATGCTCCAGGTC
3' ss Score
10.38
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GTGCGCCCCTGTTTCTCTCCCAGCCCCACTTCTACAATGCTGACCCCGTGCTGTCAGAAGCTGTTCTTGGTCTGAACCCTGACCCAAAGGAGCATTCCTTGTTCCTAGACATCCACCCG
Seq A exon
GTCACTGGGATCCCCATGAACTGTTCCGTGAAGATGCAGCTGAGTCTGTACATCAAATCCGTCAAGGGCGTCGG
Seq C2 exon
GCAAACAGGGAAGATCGAGCCAGTAGTCCTGCCATTGCTGTGGTTCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000981-'21-18,'21-16,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(8.6=100)
A:
PF0113016=CD36=FE(5.3=100)
C2:
PF0113016=CD36=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGCCCCTGTTTCTCTC
R:
TTCGAACCACAGCAATGGCAG
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]