DreEX0064387 @ danRer10
Exon Skipping
Gene
ENSDARG00000101557 | scarb1
Description
scavenger receptor class B, member 1 [Source:ZFIN;Acc:ZDB-GENE-031126-1]
Coordinates
chr10:44873057-44889952:+
Coord C1 exon
chr10:44873057-44873175
Coord A exon
chr10:44887190-44887263
Coord C2 exon
chr10:44889901-44889952
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATGTGTGTCTGCATTACAGGAG
3' ss Score
8.24
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTTCTCCAACATTCATCTCTCAGCCGCACTTTTATAACGCTGACCCGCAGCTGCTGGACACAGTCAGTGGATTGAGCCCAAGTGAAGATGAACATGGCCTTTTTATTGATATCCACCCG
Seq A exon
GAGACTGGTGTGCCGGTGAACGTCTCTGTTCGGTTGCAGCTCAACCTTTTCTTAAAGAAAGTTTCGGGAATCTC
Seq C2 exon
AGAAACAGGGAATATAGCGGAGGTGGTGATGCCCATGCTGTGGTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101557-'10-12,'10-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(16.2=68.0)
A:
PF0113016=CD36=FE(20.0=100)
C2:
PF0113016=CD36=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACATTCATCTCTCAGCCG
R:
CCACAGCATGGGCATCACC
Band lengths:
159-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]