BtaEX6072204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54155168-54156558:-
Coord C1 exon
chr17:54156394-54156558
Coord A exon
chr17:54155463-54155670
Coord C2 exon
chr17:54155168-54155324
Length
208 bp
Sequences
Splice sites
3' ss Seq
ACAGATGTCTTCCGCTGCAGGCG
3' ss Score
7.25
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTATTGCTGACTACATAACTCGGTGCAAACAGGCCATTGGGAAATTTGAGTCCCTTGTCCACCAGATTCATAAGAATGCAGATGACATTTCTTCCAGACTTACTTTGATAGAGTCCATAAATCTCTTTAAATATCCAGCACCTAAAAGTGAGGACGAACTCCCAG
Seq A exon
GCGTCAAGGAGTTCTTTGAACACATTGAACGAGAACGGGCCAAGGACGTGGACCACATGGTCAGGTGGTATCTTGCCATTGGGCCTCTTCTGACCAAAGTTGAGGGGCTGGTCATCCACACCAACACGGGCAAGGCCCCCAAGCTGGCCTCCTACTATGAATACTGGGAAAATAGAATCTACGAGGTCCTGACAAAGCTCATCCTGAA
Seq C2 exon
GAATCTGCAGTCTTTTAATTCTTTAGTCCTTGGAAACGTCCCTTTGTTCCAAACGGAAACCATCTTGACGGCGCCAGAGATCATTCTGCATCCCAATGCAAATGAGATTGACAAAATGTGTGTTCACTGTGTCCGAAACTGTGTGGAGATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(2.7=10.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACTCGGTGCAAACAGGCC
R:
CCACACAGTTTCGGACACAGT
Band lengths:
297-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]