GgaEX0004134 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4940722-4942471:-
Coord C1 exon
chr15:4942307-4942471
Coord A exon
chr15:4941661-4941865
Coord C2 exon
chr15:4940722-4940878
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTAATATTTTGCAGATG
3' ss Score
10.97
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTATTGATGACTTTATAGTCCGATGTAAACAAGCCATCAAGAAGTTTGAATTCCTCGTCCATCAGATTCATGCTAAATCTGGAGACATAAATGACAATCTTCTGCAAATAGGATCAACAAATCTTTTTAAATTTCCACTTTCAAAAAGTGGTGATGTGCTTCCCA
Seq A exon
ATGTGAAAGAATTTTTTGAGTATGTTAAGTGTGAAAGAGCAAAAGATATAGATCACATGGTTAGAAAGTATACTGCCATTCCGCAGCTGTTAACACAACTGGAAGGGATTGTCAATATAAAGAGTGACAAATCTTCAAAATTGGCTTCCTATTATGCATACTGGGAAAATAGAATTTATCAGATGTTGATACAGTTAATTCTGAA
Seq C2 exon
GAATTTGCAAGCTTTTAATGCAGCTGTTCTTGCAAATGTGCCACTCTTCCAAATAGAAGCTGTTTTGTCTCCTCCAAAGTTTATCTTGCTACCCAATGCCTGTGAAATTGAGAAAATGGCAGGACAATGTATTCGAGACTGTGTTGAGGTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'13-14,'13-12,14-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=10.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCGATGTAAACAAGCCATCA
R:
TGTGACCTCAACACAGTCTCG
Band lengths:
303-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]