MmuEX6021091 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124755654-124760173:+
Coord C1 exon
chr5:124755654-124755818
Coord A exon
chr5:124758247-124758454
Coord C2 exon
chr5:124760017-124760173
Length
208 bp
Sequences
Splice sites
3' ss Seq
ACTCTCGTCCTTCTCTACAGGTG
3' ss Score
12
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
GAATCTCTGACTACATCACTCGCTGCAAGCAGGCCATCGGCAAGTTCGAAACTCTGGTCCACCAGATTCACAAGAATGCCGACGACATCAACTCCAGGCTCACGCTCATCGAGTCGGTCAGCCTTTTCCGGTTCCCAGTCGCCAAAACTGCGGATGGGGTCCCAG
Seq A exon
GTGTAAAAGAATTCTTTGAGTACATTGAACGAGAAAGGGCCAGGGATGTGGACCACATGGTCCGGTGGTACATGGCTATCGGGCCTCTGCTGACCAAGGTGGAAGGTCTAGTGGTACACACCAACACGGGCAGGGCCCCAAAGCTAGCTTCCTACTATGAGTACTGGGAAGGCAAGATCTACGACGTCTTGGTGAAGCTCATACAGAA
Seq C2 exon
GAATCTACAGGCTTTCAACTCTCTGATCCTCAGAAATGTCCCTCTGTTCCAAGCGGAAACCATCTTGTCAGCTCCAGAAATCGTTCTCCACCCAAACGCCAACGAGATCGATAAGATGTGTGTCCACTGTGTCCGCAGCTGTGTGGAGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=10.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCACTCGCTGCAAGCAG
R:
GTGACCTCCACACAGCTGC
Band lengths:
307-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types