DreEX6011139 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27723281-27723999:+
Coord C1 exon
chr5:27723281-27723445
Coord A exon
chr5:27723555-27723762
Coord C2 exon
chr5:27723843-27723999
Length
208 bp
Sequences
Splice sites
3' ss Seq
ATATTTGTCTGTTGTTCCAGGAA
3' ss Score
9.66
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GTATACCACAATTCATCCAACGTGGAAACCAGGCAGCTTCAAAATTTGAGTCACTTGAGAATCAGATTCAGAAGAACGAACGCGACATTGATGATAAACTAAAGTCTATCGAATCTGCAAACCTTTTCAAGTTCCCGTTGGCAGATCAAACCGGATATCTTCCAG
Seq A exon
GAATAAGGGAGTTCTGTGAATTCATTGAATCTGAGAGGGCAAAGACAGTGAATCTGCTTGTAAATATGTATGCAGCTATCAGTCCCCTCCTCACCAAGATGGAGAGTCTGATCATGGGGACCAGCACTGGCAAAGCCAAAGGCATGGCTCAGTTCTATGCTTACTGGGAGCGCAAGATCTTCGATTCACTTACCAAGATGGTGTTTCA
Seq C2 exon
GAATATTCAAGCCTTTAACACAGCACTGATGGGCAATACTCCACTCTTCCAAATCGATACCATCCTAGCTGCTCCAGAGATTGCTTTGCTTCCTAAGAGCAGTGAAGTCTACAAGCTTATTAGGCAGTGTGTCGGTGACTGTGTGGAGACGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=10.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACCAGGCAGCTTCAAA
R:
AGTCGTCTCCACACAGTCACC
Band lengths:
297-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]