HsaEX6069971 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124288208-124293500:+
Coord C1 exon
chr12:124288208-124288372
Coord A exon
chr12:124289380-124289587
Coord C2 exon
chr12:124293344-124293500
Length
208 bp
Sequences
Splice sites
3' ss Seq
ACAGACATCTTTCTCTCCAGGCG
3' ss Score
8.17
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTATCGGTGACTATATAACTGGTTGCAAACAGGCCATTGGGAAATTTGAGTCTCTCGTCCACCAGATTCATAAGAATGCAGATGACATTTCTTCCAGGCTGACATTAATAGAGGCCATAAATCTCTTTAAATATCCAGCCGCTAAAAGTGAGGAAGAACTCCCAG
Seq A exon
GCGTGAAGGAATTTTTTGAACACATTGAGCGAGAAAGGGCCAGCGACGTGGACCACATGGTCCGGTGGTATCTTGCCATTGGACCACTGCTGACCAAAGTTGAGGGCCTGGTCGTCCACACCAACACAGGCAAGGCCCCCAAGCTGGCCTCCTACTACAAATACTGGGAAAAGAAAATTTATGAGGTCCTGACAAAGCTCATCCTGAA
Seq C2 exon
GAACTTGCAGTCTTTTAATTCTTTGATCCTTGGAAATGTCCCTCTGTTCCACACTGAAACCATTCTGACGGCACCTGAGATCATCCTTCATCCCAACACAAATGAGATCGACAAGATGTGCTTCCATTGTGTCCGGAATTGCGTGGAGATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'15-17,'15-16,16-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(2.7=10.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGCAAACAGGCCATTG
R:
CACGCAATTCCGGACACAATG
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)