BtaEX6072213 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54140709-54143366:-
Coord C1 exon
chr17:54143213-54143366
Coord A exon
chr17:54141807-54142040
Coord C2 exon
chr17:54140709-54140831
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTGTCATATTCCTGACTAGGCT
3' ss Score
7.48
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCATTGGAAAGAGCTTATGGAGAAAACGGGCGTGATTTTTGAAATGACTGAAACATTCACCTTGGAAAACATGTTTGCTATGGAACTTCACAAACACACGGATGTTCTCAATGAGATTGTGACGTCGGCCATTAAGGAGATAGCCATTGAGAAG
Seq A exon
GCTGTGAAGGAAATCCTGGACACATGGGAAAATATGAAATTTAATGTGGTCAAGTATTACAAAGGCACCCAGGAGCGAGGCTACATCTTGGGGTCTGTTGACGATATCGTCCAGTGCCTGGATGACAACACTTTCAACCTGCAAAGCATCTCAGGAAGCAGATTTGTGGGACCTTTCCTGCAGACAGTTCACAAATGGGAAAAAACGCTTTCTCTCATAGGCGAAGTCATTGAG
Seq C2 exon
ATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTGGAAAGCATCTTTATTGGTGGAGATATCAGATCACAACTTCCAGATGAAGCAAAGAAGTTTGATAACATCGACAGAGTATTTAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(18.6=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGGAAAGAGCTTATGGAGA
R:
TACTCTGTCGATGTTATCAAACTTCT
Band lengths:
268-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]