DreEX6011130 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27729154-27730729:+
Coord C1 exon
chr5:27729154-27729310
Coord A exon
chr5:27730293-27730526
Coord C2 exon
chr5:27730607-27730729
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTATATTTTTACAGGGA
3' ss Score
8.82
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCACTGGAAGAGCCTAATGGAGAGGACAGGTACTAACTTTGAGATGAACCCAAACACCTTCACTCTTGAAAACATGTTCGCCATGGAACTGCACAAGTATGGTAACGTCATCAGTGAAATCGTCACCTCAGCTGTCAAGGAGCTTGGCATTGAAAAG
Seq A exon
GGAGTAAAAGAAGTGGAAGAAACATGGGATAGTATGAAGTTCACTGTGCATCGATACTTCAAAGGCACACAAGAACATGGTTTCATTCTTGGTGCTGTGGATGACATCCTTCAACACCTGGACGATGATGCCATGAACCTGCAGAGCATGGCAGGCAGCCACTTTGTTGGTCCCTTCCTGGCCACCGTTCAACAGTGGGAGAAGAATCTATCACTTATCAGTGAGACTATTGAG
Seq C2 exon
GTGTGGATGTTAGTACAGCAGAAATGGATGTACCTAGAAAGCATCTTCATTGGAGGTGACATCCGCTCTCAGCTACCTGAGGAAGCCAAAAAATTTGACAATATCGACAAAACGTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'29-27,'29-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.6=100)
A:
PF083938=DHC_N2=FE(18.6=100)
C2:
PF083938=DHC_N2=PD(20.1=39.6),PF083938=DHC_N2=PU(54.2=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGAAGAGCCTAATGGA
R:
TTGAACGTTTTGTCGATATTGTCA
Band lengths:
276-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]