HsaEX6069962 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124315093-124320075:+
Coord C1 exon
chr12:124315093-124315246
Coord A exon
chr12:124317661-124317894
Coord C2 exon
chr12:124319953-124320075
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTATTCCTGAACAGGCT
3' ss Score
9.57
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAATGAGATTGTCACAGCAGCAATCAAGGAGGTTGCCATTGAGAAG
Seq A exon
GCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAG
Seq C2 exon
ATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(18.6=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGGAAAGAACTTATGGAAAAA
R:
TTTTGCCTCTTCCGGAAGTTGT
Band lengths:
244-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)