GgaEX0004137 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4935539-4936551:-
Coord C1 exon
chr15:4936395-4936551
Coord A exon
chr15:4935760-4935993
Coord C2 exon
chr15:4935539-4935661
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTTCTATGTGCACATGCAGGGT
3' ss Score
6.63
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCATTGGCAAGACCTTATGGAGAGAACAGGCACAAGATTTGAAATGACAACAGAAACATTTACTTTGGAGAATATGTTTGCTATGGAACTTCACAAACACTCAGATATTATCAATGAAATAGTTGGAACAGCTGTTAAGGAGCTTAGCGTCGAGAAG
Seq A exon
GGTATGAAGGACATAGCAGAAACATGGGAACAGCTGAAATTTACTGTACAAATGTATTTCAAAGGCACTGAGAAGCGTGGCTTTATTCTGGGATCTGTAGATGAAATTTTAGAGATTCTTGACGACAACAGTGTCAATCTTCAGAGTATCTTGGGCAGTCGTTTTGTGGGTCCTTTCCTTTCAACTGTTCACCGCTTGGAAAAAACTCTGTCATTGATTGGTGAAGTAATTGAG
Seq C2 exon
ATCTGGATGGTGGTTCAGAGAAAATGGATGTACCTGGAGGGCATCTTTGTTGGCGGAGATATAAGATCACAGCTTTCAGAGGAGGCTGAAATGTTTGACAGTGTAGACAGTATGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE9
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.6=100)
A:
PF083938=DHC_N2=FE(18.6=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGGCAAGACCTTATGGAGA
R:
ACTGTCTACACTGTCAAACATTTCA
Band lengths:
268-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]