HsaEX6069962 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123830546-123835528:+
Coord C1 exon
chr12:123830546-123830699
Coord A exon
chr12:123833114-123833347
Coord C2 exon
chr12:123835406-123835528
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTATTCCTGAACAGGCT
3' ss Score
9.57
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAATGAGATTGTCACAGCAGCAATCAAGGAGGTTGCCATTGAGAAG
Seq A exon
GCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAG
Seq C2 exon
ATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'35-34,'35-33,36-34
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(18.6=100)
C2:
PF083938=DHC_N2=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGGAAAGAACTTATGGAAAAA
R:
TTTTGCCTCTTCCGGAAGTTGT
Band lengths:
244-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains