BtaEX6072216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54133075-54136397:-
Coord C1 exon
chr17:54136174-54136397
Coord A exon
chr17:54133410-54133679
Coord C2 exon
chr17:54133075-54133258
Length
270 bp
Sequences
Splice sites
3' ss Seq
AAGGCACGCTTTTCCTTTAGGGT
3' ss Score
7.5
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
ATGTATGACAACATAGCACTGCTGAGGTTTCATGACGGGGACAGTGGAGAAAAACTGGTATCTGCCATGATATCAGCAGAAGGAGAAGTCATGGAGTTCCGGAAGATCATCCGGGCTGAGGGGCGTGTGGAGGACTGGATGACAGCAGTTTTGAACGAAATGCGAAGAACTAACAGGCTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAAAACCAG
Seq A exon
GGTCGACTGGATGCTCATGTACCAAGGGATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGATGTCTTCCGCAAAGTGAAGCAGGGGGAGAAGCAGGCCATGAAGAACTACGGCCAGAAGATGCACCGGCAGATCGACGAGCTGGTCACCCGGATCACCTTGAACTTAAGCAGGAACGACCGAAAGAAATACAACACCGTGCTCATCATAGACGTGCATGCCCGCGACATAGTCGACTCTTTCATCCGGGGCAG
Seq C2 exon
CATTCTCGAGGCCCGGGAGTTTGAATGGGAAAGTCAGCTGCGTTTTTACTGGGACCGGGAACCAGATGAGCTGAACATCCGCCAGTGCACGGGCACCTTCGGATACGGCTACGAGTACATGGGTTTGAACGGGCGGCTGGTTATCACGCCCCTGACGGACCGGATCTACCTGACGCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'30-33,'30-32,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NO
C2:
PF127742=AAA_6=PU(11.2=41.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGGGGACAGTGGAGAAA
R:
CTCGTAGCCGTATCCGAAGGT
Band lengths:
308-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]