HsaEX6069959 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124325869-124330701:+
Coord C1 exon
chr12:124325869-124326092
Coord A exon
chr12:124330147-124330416
Coord C2 exon
chr12:124330518-124330701
Length
270 bp
Sequences
Splice sites
3' ss Seq
CAGGTGTGCGTTTTCTGCAGAGT
3' ss Score
8.29
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCTTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAG
Seq A exon
AGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCTAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGCGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCATGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAG
Seq C2 exon
TATCCTGGAGGCCCGAGAGTTTGACTGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGATCGGATTTACCTGACGCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NO
C2:
PF127742=AAA_6=PU(11.3=41.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAAAACTGGTGTCCGC
R:
GTAGCCGTAGCCAAAGGTTCC
Band lengths:
292-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)