MmuEX6021078 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124773740-124775528:+
Coord C1 exon
chr5:124773740-124773963
Coord A exon
chr5:124774976-124775245
Coord C2 exon
chr5:124775345-124775528
Length
270 bp
Sequences
Splice sites
3' ss Seq
CTGGCTCGCTTTCCCTGCAGGGT
3' ss Score
11.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGTATGATAACATAGCCATGCTGCGCTTCCACGATGGGGACAGCGGGGAGAAGCTCGTGTCGGCCATGATCTCGGCAGAGGGAGAAGTCATGACCTTCCGCAAGATCATCCGGGCCGATGGCCGTGTGGAAGACTGGATGACCGCGGTGCTACACGAAATGAGGAGGACCAACAGGCTCATCACCAAGGAAGCCATCTTCAGATACTGTGAAGACAGAAGCAG
Seq A exon
GGTGGACTGGATGCTGCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAAGTGGAAGATGTCTTCAACAAGGTCAAGCAAGGGGACAAGCAGGCCATGAAGAACTACGGCAAGAAGATGCACAGCCAGATTGATGACCTGGTGACGCGGATCACCATGGAGCTGAGCAAAAACGACAGGAAGAAATACAACACTGTCCTGATCATCGATGTCCACGCCCGGGACATCGTGGATTCCTTCATCCGGGGCAG
Seq C2 exon
CATCCTTGAGGCCCGGGAGTTTGAGTGGGAGAGCCAGCTCCGCTTCTACTGGGACCGCGAGCCAGATGAGCTCAACATCCGCCAGTGCACTGGGACCTTCAGCTACGGCTATGAGTACATGGGCCTCAACGGGAGGCTGGTCATCACGCCCCTTACAGACCGCATCTACCTGACGCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'23-44,'23-33,34-44=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NO
C2:
PF127742=AAA_6=PU(11.3=41.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCCGCAAGATCATCCG
R:
GTCTGTAAGGGGCGTGATGAC
Band lengths:
292-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types