DreEX6011126 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27732856-27735313:+
Coord C1 exon
chr5:27732856-27733079
Coord A exon
chr5:27733206-27733475
Coord C2 exon
chr5:27735130-27735313
Length
270 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTGCTGTTCTGTCAGAGT
3' ss Score
6.96
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGTATGACAACATAGCAGCTTTGCGTTTCGATACGGGAATGAATGGAGAGATGGTGGCAAATGCACTTGTGTCTGCTGAGGGGGAGGTGATGGAGCTCAAACAGCCTGTACCTGCAGAGGGCCGCGTGGAGGACTGGATGACTGCGGTGCTGTTGGAGATGAGAAGAACCAACAGACTCATCACCAAAGAGGCTATTTACTTCTACAGCCACCAAAAGTCAAG
Seq A exon
AGTGGACTGGATGCTTGACTACCAGGGTATGGTGGTACTAGCAACAAACCAGGTATGGTGGACCTATGAGGTGGAAGATGTCTTCAGGAGGATGAATGAAGGAGAGAAGCAGGCACTGAAGCAGTATGCAAAGAAAATGCACCAGCAGATCAATGACCTGGTGAAACGCATCACAGAACCCTTAAAGAAGAATGACAGACGAAAAATCAACACTGTCCTCATCATTGATGTCCATGCTAGAGATATTGTGGACTCTTTTGTCAGAGACAG
Seq C2 exon
CATCACAGATGCTCGTGAGTTTGAATGGGAGAGTCAGTTGAGATTCTACTGGGTGAAAGAGCCTGATGAGCTGTTTGTGCGGCAGTGCAGTGCTCAGTTCTGCTACGGCTATGAGTACATGGGACTGAACGGCCGACTGGTCATTACTCCCCTGACTGACCGCATCTATCTCACACTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'33-31,'33-30,34-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NO
C2:
PF127742=AAA_6=PU(11.3=41.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACTTGTGTCTGCTGAGG
R:
GCCGTTCAGTCCCATGTACTC
Band lengths:
296-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]