MmuEX6021078 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125254110-125255898:+
Coord C1 exon
chr5:125254110-125254333
Coord A exon
chr5:125255346-125255615
Coord C2 exon
chr5:125255715-125255898
Length
270 bp
Sequences
Splice sites
3' ss Seq
CTGGCTCGCTTTCCCTGCAGGGT
3' ss Score
11.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGTATGATAACATAGCCATGCTGCGCTTCCACGATGGGGACAGCGGGGAGAAGCTCGTGTCGGCCATGATCTCGGCAGAGGGAGAAGTCATGACCTTCCGCAAGATCATCCGGGCCGATGGCCGTGTGGAAGACTGGATGACCGCGGTGCTACACGAAATGAGGAGGACCAACAGGCTCATCACCAAGGAAGCCATCTTCAGATACTGTGAAGACAGAAGCAG
Seq A exon
GGTGGACTGGATGCTGCTGTACCAAGGCATGGTGGTGCTGGCCGCCAGCCAGGTGTGGTGGACCTGGGAAGTGGAAGATGTCTTCAACAAGGTCAAGCAAGGGGACAAGCAGGCCATGAAGAACTACGGCAAGAAGATGCACAGCCAGATTGATGACCTGGTGACGCGGATCACCATGGAGCTGAGCAAAAACGACAGGAAGAAATACAACACTGTCCTGATCATCGATGTCCACGCCCGGGACATCGTGGATTCCTTCATCCGGGGCAG
Seq C2 exon
CATCCTTGAGGCCCGGGAGTTTGAGTGGGAGAGCCAGCTCCGCTTCTACTGGGACCGCGAGCCAGATGAGCTCAACATCCGCCAGTGCACTGGGACCTTCAGCTACGGCTATGAGTACATGGGCCTCAACGGGAGGCTGGTCATCACGCCCCTTACAGACCGCATCTACCTGACGCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'19-37,'19-29,30-37=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NO
C2:
PF127742=AAA_6=PU(11.3=41.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGATGGAGAAGTTTGCGG
R:
AGTGATCAAGGGGGAAAGGCC
Band lengths:
292-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: