BtaEX6072220 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54125012-54129943:-
Coord C1 exon
chr17:54129791-54129943
Coord A exon
chr17:54127310-54127498
Coord C2 exon
chr17:54125012-54125161
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCTCTTGTCCCCTAGTTT
3' ss Score
9.27
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCGTCGGGAAGATCTTCTCGGGCCTCGCTCAGTGCGGGGCTTGGGGCTGCTTCGATGAGTTTAATCGCATTGATGCCTCTGTGTTGTCAGTCATCTCGTCCCAGATTCAGACGATAAGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
Seq A exon
TTTGAAGGGCAAGAGATCTCCCTGGACTCCAGAATGGGCATCTTCATCACCATGAACCCTGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCTCTCTTCCGGCCGGTGGTGGTGATCGTGCCGGACCTGCAGCAGATCTGCGAGATCATGTTGTTCTCCGAGGGCTTCCTCTGGGCCAAG
Seq C2 exon
AAGACTCTGGCCAAAAAGATGACCGTCCTGTATAAGCTGGCCCGGGAGCAGCTCTCCAAGCAACATCATTATGATTTTGGACTCAGAGCCCTGAAATCGGTATTGGTGATGGCTGGTGAGCTGAAGAGAGGCTCTTCTGAGCTTCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'34-37,'34-36,35-37=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
PF127742=AAA_6=FE(26.7=100)
C2:
PF127742=AAA_6=PD(19.4=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGCTTCGATGAGTTTA
R:
AGAGCCTCTCTTCAGCTCACC
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]