HsaEX6069955 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124333277-124337899:+
Coord C1 exon
chr12:124333277-124333429
Coord A exon
chr12:124335435-124335623
Coord C2 exon
chr12:124337753-124337899
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTCTTGCCCTCCAGTTT
3' ss Score
10
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
Seq A exon
TTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAG
Seq C2 exon
ACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
PF127742=AAA_6=FE(26.8=100)
C2:
PF127742=AAA_6=PD(19.0=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGGCTGCTTTGATGAGT
R:
CCCTAAGGTCAGAGGAGCCTC
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)