MmuEX6021074 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124777817-124782414:+
Coord C1 exon
chr5:124777817-124777969
Coord A exon
chr5:124779084-124779272
Coord C2 exon
chr5:124782268-124782414
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCCTGCCACCCAGTTC
3' ss Score
7.24
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTGTCGGGAAGATCTTCTCTGGCCTTGCCCAGTGTGGCGCGTGGGGCTGCTTCGATGAGTTCAACCGGATCGATGCCTCCGTGCTGTCTGTCATCTCGTCTCAGATCCAGACAATCCGCAATGCGCTGATCCATCAGCTGACCACGTTCCAG
Seq A exon
TTCGAAGGGCAGGAGATCTCCCTTGACTCTCGGATGGGCATCTTCATCACCATGAACCCGGGCTATGCGGGCCGCACGGAGCTGCCTGAGTCTGTGAAGGCGCTGTTCAGGCCTGTGGTTGTCATTGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTTTTCTCTGAGGGCTTCCTGGGCGCCAAG
Seq C2 exon
ACGCTGGCCAAGAAGATGACAGTTCTCTATAAGCTGGCCCGGGAGCAGCTGTCGAAACAGCACCACTATGACTTTGGGCTCCGGGCCCTGAAGTCAGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCGCAGACCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'37-38,'37-37,38-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
PF127742=AAA_6=FE(26.8=100)
C2:
PF127742=AAA_6=PD(19.0=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGATCTTCTCTGGCCT
R:
GCCATGACCAGCACTGACTTC
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types