DreEX6011123 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27737770-27740300:+
Coord C1 exon
chr5:27737770-27737922
Coord A exon
chr5:27738023-27738211
Coord C2 exon
chr5:27740154-27740300
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTGTGTTGGTTAGTTT
3' ss Score
6.7
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCTGTGGGGAAGATTCTCTCTGGTTTAGCTCAGTGTGGAGCCTGGGGCTGTTTTGACGAGTTCAATCGCATTGACGCCTCAGTGCTGTCTGTCATCTCATCCCAGATCCAAACAATCAGAAACGCTCTCATGCTGCACCTCCAGAGATTTCAT
Seq A exon
TTTGAAGGTCAAGAAATCAGTCTGGACAACCGCATTGGGATTTTCATCACAATGAACCCAGGTTATGCCGGCCGCACAGAACTTCCAGAGTCAGTGAAAGCTTTATTCAGACCAGTGGTTGTCATCGTTCCTGACCTGCAGCAGATTTGTGAGATCATGCTCTTCTCTGAAGGCTTCCTTGTGGCTAAG
Seq C2 exon
GTTTTGGCAAAGAAGATGACAGTGCTGTACAAACTAGCCCGGGAGCAGCTGTCTAAACAGTCACACTACGACTTTGGTCTTAGAGCACTTAAATCTGTGTTAGTAATGGCAGGGGAGCTGAAGAGAGGTTCTCCTAATCTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'37-36,'37-34,38-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
PF127742=AAA_6=FE(26.8=100)
C2:
PF127742=AAA_6=PD(19.0=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGTTTTGACGAGTTCA
R:
AGAACCTCTCTTCAGCTCCCC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]