GgaEX0004142 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4884549-4886061:-
Coord C1 exon
chr15:4885927-4886061
Coord A exon
chr15:4884787-4884975
Coord C2 exon
chr15:4884549-4884695
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTCATGTGCTTTTAGTTT
3' ss Score
5.78
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTTTATCAATGTTTTTGGGAGGAGCACCAGCAGGGCCAGCAGGTACAGGGAAAACAGAAACAACCAAGGATCTGGCCAAAGCACTGGGCTTGCTGTGTGTGGTGACAAACTGTGGAGAAGGCATGGATTTCAAA
Seq A exon
TTTGAAGGACAAGAAATTAACCTTGATAGCCGAATGGGCATTTTTATTACAATGAATCCTGGTTATGCTGGCCGGACTGAACTCCCTGAGTCTGTAAAAGCTTTGTTCAGGCCTGTGGTTGTTATTGTACCAGATCTTCAGCAAATCTGTGAAATCATGCTCTTTTCTGAAGGATTCCTTACAGCAAAG
Seq C2 exon
GTCCTTGCCAAAAAGATGACAGTGCTATACAAGCTGGCAAAAGAACAACTTTCTAAACAACATCATTATGATTTTGGACTACGGGCCCTTAAATCAGTGTTGGTGATGGCTGGGGAACTGAAAAGAGGATCACCAGACCTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
PF127742=AAA_6=FE(26.8=100)
C2:
PF127742=AAA_6=PD(19.0=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTGGGAGGAGCACCAG
R:
CCTCTTTTCAGTTCCCCAGCC
Band lengths:
253-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]