BtaEX6072221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54121952-54125161:-
Coord C1 exon
chr17:54125012-54125161
Coord A exon
chr17:54123869-54124060
Coord C2 exon
chr17:54121952-54122070
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTCATTCCATGCAGGAT
3' ss Score
9.91
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAGACTCTGGCCAAAAAGATGACCGTCCTGTATAAGCTGGCCCGGGAGCAGCTCTCCAAGCAACATCATTATGATTTTGGACTCAGAGCCCTGAAATCGGTATTGGTGATGGCTGGTGAGCTGAAGAGAGGCTCTTCTGAGCTTCGGGAG
Seq A exon
GATGTGGTGTTGATGAGGGCCCTTCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGACGTGCCTCTCTTCCTTGGTTTGATCTCCGACCTGTTCCCTGGACTGGATTGCCCTCGGGTTCGCTACCCTGATTTCAATGATGCTGTGGAACAGGTGCTTCAGGAAAATGGCTACATCATCTTACCTGTCCAG
Seq C2 exon
GTGGATAAGGTGGTTCAGATGTTCGAGACCATGTTGACTCGCCACACGACGATGGTGGTGGGGCCCACGGGAGGGGGCAAGTCCGTGGTCATTAATGCTCTGTGTCAGGCCCAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.4=90.0)
A:
NO
C2:
PF077289=AAA_5=PU(17.4=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAAAAGATGACCGTCCT
R:
TGGGCCTGACACAGAGCATTA
Band lengths:
255-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]