MmuEX6021072 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124782268-124785266:+
Coord C1 exon
chr5:124782268-124782414
Coord A exon
chr5:124783828-124784019
Coord C2 exon
chr5:124785148-124785266
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCACCCTCTGGTCCCTCCAGGAT
3' ss Score
9.98
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACGCTGGCCAAGAAGATGACAGTTCTCTATAAGCTGGCCCGGGAGCAGCTGTCGAAACAGCACCACTATGACTTTGGGCTCCGGGCCCTGAAGTCAGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCGCAGACCTGCAGGAG
Seq A exon
GATGTCGTCCTGATGCGGGCGCTGCGGGACATGAACCTGCCCAAGTTTGTGTTTGAGGACGTCCCCCTCTTCCTGGGCCTCATCTCTGACCTGTTTCCCGGGCTGGACTGCCCCCGTGTGCGCTACCCGGATTTCAACGACGCAGTGGAGCAGGTGTTGGAGGAAAATGGTTATGTGCTCCTGCCAGTCCAG
Seq C2 exon
GTGGATAAAGTGGTCCAAATGTTCGAGACCATGCTGACCCGCCACACCACAATGGTGGTAGGGCCTACAGGAGGGGGCAAGTCCGTAGTCATCAATACTCTGTGTCAGGCCCAGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'39-40,'39-39,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NO
C2:
PF077289=AAA_5=PU(17.4=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCTATAAGCTGGCCCGG
R:
GTCTGGGCCTGACACAGAGTA
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types