GgaEX0004143 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4930026-4931357:-
Coord C1 exon
chr15:4931211-4931357
Coord A exon
chr15:4930314-4930505
Coord C2 exon
chr15:4930026-4930144
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGTATTTTGTCTAGGAG
3' ss Score
8.12
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTCCTTGCCAAAAAGATGACAGTGCTATACAAGCTGGCAAAAGAACAACTTTCTAAACAACATCATTATGATTTTGGACTACGGGCCCTTAAATCAGTGTTGGTGATGGCTGGGGAACTGAAAAGAGGATCACCAGACCTCAGTGAG
Seq A exon
GAGGTTGTACTGATGAGAGCTCTACGAGATATGAATCTTCCTAAATTTGTGTTTGAAGATGTACCTCTCTTCCTTGGCCTAATCTCTGACCTGTTTCCTGGCCTGGACTGCCCTCGAGTCCGCTACCCTGACTTTAATGATGCTGTAGAACAAGTGCTGGAAGAAGGGGGTTATATTGTTTTACCAGTTCAG
Seq C2 exon
GTGGATAAAGTTGTTCAGATGTATGAGACAATGTTAACTAGACACACTACAATGGTGGTTGGGCCTACTGGAGGTGGCAAATCAGTTGTCATTAATGCTTTGTGCCAAGCCCAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NO
C2:
PF077289=AAA_5=PU(17.4=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCCAAAAAGATGACAGTGC
R:
AGCATTAATGACAACTGATTTGCCA
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]