HsaEX6069953 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123853206-123859268:+
Coord C1 exon
chr12:123853206-123853352
Coord A exon
chr12:123857056-123857247
Coord C2 exon
chr12:123859150-123859268
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTCATTTCCTGCAGGAC
3' ss Score
11.53
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAG
Seq A exon
GACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGTCCTACCCATCCAG
Seq C2 exon
GTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'48-48,'48-47,50-48=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
PF0319311=DUF258=PU(30.0=28.1)
C2:
PF0319311=DUF258=FE(65.0=100)
Main Skipping Isoform:
ENST00000409039fB13948
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCGAAAAAGATGACGG
R:
TTAATGACGACGGACTTGCCC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains