DreEX6011122 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27740154-27740786:+
Coord C1 exon
chr5:27740154-27740300
Coord A exon
chr5:27740392-27740583
Coord C2 exon
chr5:27740668-27740786
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTACACCTACTAGGAT
3' ss Score
6.86
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTTTTGGCAAAGAAGATGACAGTGCTGTACAAACTAGCCCGGGAGCAGCTGTCTAAACAGTCACACTACGACTTTGGTCTTAGAGCACTTAAATCTGTGTTAGTAATGGCAGGGGAGCTGAAGAGAGGTTCTCCTAATCTCAGTGAG
Seq A exon
GATGTGGTTCTGATGAGAGCTCTTCGAGACATGAACCTACCCAAGTTTGTATTTGAGGATGTTCCTCTGTTTTTGGGCCTCATCTCAGATCTGTTTCCTGGACTCGACTGTCCACGTGTGCGTTATCCCAGCTTCAATGATGCTGTAGAGGCCATCCTGGAGGAAAATAGGTATATCATGATGCCCAGTCAG
Seq C2 exon
GTGGACAAAGTGGTGCAAATGTATGAAACTATGATGACCAGACACACAACCATGGTTGTCGGACCCACAGGAGGAGGGAAATCTGTGGTGATCAACACACTCTGCCAATCACAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'40-38,'40-37,42-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NO
C2:
PF077289=AAA_5=PU(17.4=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTACAAACTAGCCCGG
R:
GGTCTGTGATTGGCAGAGTGT
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]