BtaEX6072223 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54119002-54122070:-
Coord C1 exon
chr17:54121952-54122070
Coord A exon
chr17:54119592-54119750
Coord C2 exon
chr17:54119002-54119137
Length
159 bp
Sequences
Splice sites
3' ss Seq
AGGCTTTTCATTCTATGTAGGCT
3' ss Score
6.57
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTGGATAAGGTGGTTCAGATGTTCGAGACCATGTTGACTCGCCACACGACGATGGTGGTGGGGCCCACGGGAGGGGGCAAGTCCGTGGTCATTAATGCTCTGTGTCAGGCCCAGACCAA
Seq A exon
GCTTGGGCTGGTGACAAAGCTGTATATCCTGAACCCCAAGGCTATGAGTGTTATAGAGCTGTATGGCATCCTGGATCCCACCACCCGAGACTGGACTGATGGGGTGCTGTCCAACATCTTCCGGGAGATCAACAAGCCCACGGATAAGAAGGAGCGGAA
Seq C2 exon
GTATATTTTATTCGATGGTGATGTGGATGCTTTGTGGGTGGAGAACATGAATTCTGTGATGGATGACAACAAGCTGTTGACCCTGGCCAATGGCGAGCGCATTCGGCTTCAAGCACACTGTGCCCTGCTCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'39-42,'39-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
PF077289=AAA_5=FE(38.4=100)
C2:
PF077289=AAA_5=FE(32.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTTCAGATGTTCGAGACC
R:
GAAGAGCAGGGCACAGTGTG
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]