DreEX0003638 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27740668-27743142:+
Coord C1 exon
chr5:27740668-27740786
Coord A exon
chr5:27741766-27741924
Coord C2 exon
chr5:27743007-27743142
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGCTAAATTCTATCTTTAGGTT
3' ss Score
9.62
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTGGACAAAGTGGTGCAAATGTATGAAACTATGATGACCAGACACACAACCATGGTTGTCGGACCCACAGGAGGAGGGAAATCTGTGGTGATCAACACACTCTGCCAATCACAGACCAG
Seq A exon
GTTGGGACTGCTGACCAAATTGTACAGCCTGAACCCTAAAGCAATGAGTGTCATTGAGCTATATGGGATCCTGGATCCGGTCACCCGAGACTGGACTGATGGAATATTATCGAACATATTTCGTGACATCAATAAACCCACCGATAAAAAAGAAAGAAG
Seq C2 exon
GTACATCCTGTTTGATGGGGATGTGGATGCTCTTTGGGTGGAGAACATGAATTCAGTTATGGATGATAACAAGCTTCTTACACTGGCTAATGGAGAAAGAATTCGTCTCCAGAGTCACTGTGCTCTGCTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'43-40,'43-39,44-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
PF077289=AAA_5=PU(46.0=96.3)
C2:
PF077289=AAA_5=FE(32.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAAAGTGGTGCAAATGT
R:
AGAGCAGAGCACAGTGACTCT
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]