HsaEX6069951 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124343697-124349277:+
Coord C1 exon
chr12:124343697-124343815
Coord A exon
chr12:124345559-124345717
Coord C2 exon
chr12:124349142-124349277
Length
159 bp
Sequences
Splice sites
3' ss Seq
TAAAGCCTCTCTTGATTTAGGCT
3' ss Score
6.92
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAA
Seq A exon
GCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAA
Seq C2 exon
GTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'39-42,'39-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0319311=DUF258=FE(65.0=100)
A:
PF077289=AAA_5=FE(38.4=100)
C2:
PF077289=AAA_5=FE(32.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTCAAATGTTCGAGACCA
R:
CTCAAAGAGCAGGGCACAGTG
Band lengths:
247-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)