GgaEX6013577 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4929234-4930144:-
Coord C1 exon
chr15:4930026-4930144
Coord A exon
chr15:4929698-4929856
Coord C2 exon
chr15:4929234-4929369
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTTGTATTTCTAGGCT
3' ss Score
9.32
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGATAAAGTTGTTCAGATGTATGAGACAATGTTAACTAGACACACTACAATGGTGGTTGGGCCTACTGGAGGTGGCAAATCAGTTGTCATTAATGCTTTGTGCCAAGCCCAGAACAA
Seq A exon
GCTGGGATTATTGACAAAGCTTTACACACTGAATCCTAAAGCTATGTCTGTGATTGAACTATATGGGATCCTTGACCCTACCACACGAGACTGGACAGATGGAGTCCTGTCAAACATTTTTCGGGAGATCAACAGGCCTACTGACAAGAAAGAGCGAAG
Seq C2 exon
GTACATTCTGTTTGATGGAGACGTAGATGCTCTCTGGGTTGAAAACATGAATTCTGTCATGGATGACAATAAGTTATTGACCTTGGCAAATGGGGAGAGGATTAGACTTCAGTCACACTGTGCACTGTTGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'35-36,'35-35,36-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
PF077289=AAA_5=FE(38.4=100)
C2:
PF077289=AAA_5=FE(32.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTTCAGATGTATGAGACAATGT
R:
ACAACAGTGCACAGTGTGACT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]