MmuEX6021070 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125265518-125270267:+
Coord C1 exon
chr5:125265518-125265636
Coord A exon
chr5:125267687-125267845
Coord C2 exon
chr5:125270132-125270267
Length
159 bp
Sequences
Splice sites
3' ss Seq
AAGCTGCCTCTTTGGTTTAGGCT
3' ss Score
6.16
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTGGATAAAGTGGTCCAAATGTTCGAGACCATGCTGACCCGCCACACCACAATGGTGGTAGGGCCTACAGGAGGGGGCAAGTCCGTAGTCATCAATACTCTGTGTCAGGCCCAGACAAA
Seq A exon
GCTTGGGATAATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATTGAGCTGTATGGCATCCTGGATCCCACCACTCGAGACTGGACAGATGGGGTGCTGTCGAACATCTTCCGGGAGATCAACAGGCCGACCGACAAGAAGGAACGGAA
Seq C2 exon
GTATATTTTGTTCGATGGTGACGTGGATGCCTTGTGGGTGGAAAACATGAACTCCGTGATGGACGACAACAAACTGTTGACCTTGGCCAACGGGGAGCGCATCCGGCTCCAGGCGCACTGCGCCCTGCTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'37-39,'37-38,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
PF077289=AAA_5=FE(38.4=100)
C2:
PF077289=AAA_5=FE(32.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCAAATGTTCGAGACCA
R:
CTCAAAGAGCAGGGCGCAG
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: