BtaEX6072226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54115289-54118311:-
Coord C1 exon
chr17:54118189-54118311
Coord A exon
chr17:54115804-54115938
Coord C2 exon
chr17:54115289-54115505
Length
135 bp
Sequences
Splice sites
3' ss Seq
GAAATTCTGCTTTTTTATAGATG
3' ss Score
7.08
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGGGGATTTACAGTATGCCTCCCCTGCGACTGTGTCTCGATGCGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCAACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
Seq A exon
ATGGAGCAAGGTTATTTAGAGAGCCTGTTTGAGAAATACGTACCATACCTCATTGATGTGATAGTGGAAGGAATAGTGGATGGAAGACAAGGAGAAAAGCTGAAGACAATAGTTCCGCAGACAGACCTGAATATG
Seq C2 exon
GTAACCCAGTTAGCCAAGATGCTGGATTCGTTACTAGAGGGAGAAATCGAGGAGCCCGATCTTCTGGAGTGCTACTTCTTAGAGGCTCTGTACTGTTCTCTGGGCTCCTGCCTCCTTGAGGATGGAAGGGCTAAATTTGATGAATGTATTAAGCGCATTGCTTCTTTGCCTACTGCTGATACAGAAGGGATATGGGCCAGTCCTGGGGAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'42-45,'42-44,43-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGCGGAATGGTTTATGTGG
R:
GTAGGCAAAGAAGCAATGCGC
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]