MmuEX6021067 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124791667-124794442:+
Coord C1 exon
chr5:124791667-124791789
Coord A exon
chr5:124793813-124793947
Coord C2 exon
chr5:124794226-124794442
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCGGATCTCTCCTCCACAGGTG
3' ss Score
9.92
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGGAGACCTGCAATACGCCTCCCCGGCTACTGTGTCTCGATGTGGGATGGTCTATGTGGACCCTAAGAACCTGAAATACCAACCATACTGGAAGAAATGGCTACAACAGATACAAAACAAG
Seq A exon
GTGGAGCAAAAGTATTTAAATGACCTCTTCGAGAAATATGTGCCCACTCTCATCGACATGATCATAGAGGGGATCGTGGACGGGAGGCAAGGGGAGAAGCTGAAGATGGTGGTTCCCCAGACAGACCTAAATATG
Seq C2 exon
GTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'37-59,'37-48,48-59=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGACCTGCAATACGCC
R:
TTCACCCTTCCCTCCTCAAGC
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types