MmuEX6021067 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125272037-125274812:+
Coord C1 exon
chr5:125272037-125272159
Coord A exon
chr5:125274183-125274317
Coord C2 exon
chr5:125274596-125274812
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCGGATCTCTCCTCCACAGGTG
3' ss Score
9.92
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGGAGACCTGCAATACGCCTCCCCGGCTACTGTGTCTCGATGTGGGATGGTCTATGTGGACCCTAAGAACCTGAAATACCAACCATACTGGAAGAAATGGCTACAACAGATACAAAACAAG
Seq A exon
GTGGAGCAAAAGTATTTAAATGACCTCTTCGAGAAATATGTGCCCACTCTCATCGACATGATCATAGAGGGGATCGTGGACGGGAGGCAAGGGGAGAAGCTGAAGATGGTGGTTCCCCAGACAGACCTAAATATG
Seq C2 exon
GTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGACCTGCAATACGCC
R:
TTCACCCTTCCCTCCTCAAGC
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: