GgaEX0004146 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4927971-4929117:-
Coord C1 exon
chr15:4928995-4929117
Coord A exon
chr15:4928480-4928614
Coord C2 exon
chr15:4927971-4928175
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTTTTTCCCTCAGCAA
3' ss Score
8.74
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTTGGTGACTTACAGTATGCATCTCCTGCCACAGTATCCCGCTGTGGAATGGTCTTTGTGGATCCTAAAAATCTAAAATATAAGCCTTACTGGCAGAAGTGGACACAAGGAAGAGAAAACGAG
Seq A exon
CAAGAGAGAATTGAATTGAATCGTTTATTCGAAAAATATGTGCCCTGCCTTATTGATATGATTACAGAGGGAATTGTGGATGGCAAACAAGAAGAAAGGCTGAAGACCATTGTTCCTCAAACAGATTTAAATATG
Seq C2 exon
GTGGTTCAGCTGACTGTGATGCTGGAAGCTCTGCTTGGGGCACAACCTGATGATCCTGATGTTCTAGAGTGCTTTTTCTTGGAAGCCTTATATTTCTCTTTAGGTGCTTCTCTTCTTGATGCTGGAAGAGTTAAATTTGATAAATACATTAAACATGTTTCCTGTATGTCAACTGTTCATGATGAGAACATCCTGGCTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'38-40,'38-39,39-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACTTACAGTATGCATCTCC
R:
CAGCATCAAGAAGAGAAGCACCT
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]