DreEX6011118 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27743221-27744658:+
Coord C1 exon
chr5:27743221-27743343
Coord A exon
chr5:27744230-27744361
Coord C2 exon
chr5:27744442-27744658
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCATTGTGTTAACAGGAA
3' ss Score
8.51
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTGGAGATTTGCAATACGCCTCTCCGGCTACTGTCTCTCGCTGTGGAATGGTGTTTGTGGACCCTAAAAACCTTCGCTATGCTCCCTACTGGGAAAAATGGGTCAACAGCAGAGCCCCCAAA
Seq A exon
GAAAAGGCAGATCTGTGTAAACTGTTTGAAAAGTATGTGCCGAGTGCCATTGATATGATAGTGGATGGTGTGGTTGATGGTAAACAGACAGAGAAGCTAAAGACTGTAATCCTGCAGACGGATTTAAACATG
Seq C2 exon
GTGATGCAGTTGACTGTTATGGTGGATTCTTTGCTGGAGAATGAGGATTTTCTTTTTGAGGAGCTGGAGTGTTGTTTCCTAGAGGCTCTCTACTGTTCACTGGGGGCTTCACTCCTCGATAAAGGCAGACAAAAGTTTGATGCTTTTATCAAAAAGCTGTCCTCTCTCAACAGTGTTCATGATGAGAAGGTGCTGGCTGGTCCTGGAGAGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'46-43,'46-42,47-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NO
C2:
PF127752=AAA_7=PU(1.1=4.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCAATACGCCTCTCCGG
R:
GCCTTTATCGAGGAGTGAAGCC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]