BtaEX6072233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54092793-54097018:-
Coord C1 exon
chr17:54096851-54097018
Coord A exon
chr17:54095975-54096163
Coord C2 exon
chr17:54092793-54092964
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGGTCTAAAATTCAGGAA
3' ss Score
5.37
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCCAGGAGCACATAAGAATCTTGGTCACGGCACATTTTAACGATGATGTGGAGGTGGTGATGAGGGACCCCATCCTGTTTGGAGACTTCCGGACAGCTCTGCATGAAGAGGAAGCACGCATTTATGAAGATATTCAGGATTATGAGGCAGCCAAGGCTTTGTTCCAG
Seq A exon
GAAATCCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTTGACGATGCTCTGGAGCATCTGACCCGTGTGCACCGCATCATTCGAATGGACCGAGGCCACGCCCTGCTGGTTGGGGTTGGGGGCTCTGGGAAGCAGTCTCTGGCCAGGTTGGCTGCCTTCACAGCTGGCTACGAG
Seq C2 exon
GTGTTTGAGATCCTCCTGAGCCGGGGCTACTCTGAGAACAACTTCCGGGACGACCTGAAGAACCTTTACCTGAAACTTGGCATTGAGAACAAGATGATGATCTTCCTGTTCACGGATGCCCACGTGGCCGAGGAGGGTTTCCTGGAGCTCGTCAACAACATGCTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'51-56,'51-55,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(21.3=90.5)
C2:
PF127802=AAA_8=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAGCTCTGCATGAAGAG
R:
AGCATGTTGTTGACGAGCTCC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]