HsaEX6069942 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124364181-124371860:+
Coord C1 exon
chr12:124364181-124364348
Coord A exon
chr12:124366172-124366360
Coord C2 exon
chr12:124371689-124371860
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTAAATGCAGGAA
3' ss Score
9.39
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAG
Seq A exon
GAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTCTCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAG
Seq C2 exon
GTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAGTTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATTGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'53-55,'53-54,54-55=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(21.3=90.5)
C2:
PF127802=AAA_8=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGACGTGGAGGTGGTGA
R:
TGGGCATCCGTGAACAGAAAG
Band lengths:
250-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)