GgaEX0004152 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4921796-4923251:-
Coord C1 exon
chr15:4923084-4923251
Coord A exon
chr15:4922587-4922775
Coord C2 exon
chr15:4921796-4921967
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGATCACCTTTCTCTGCAGGAG
3' ss Score
10.18
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GTACAAGGACATATCAAAAACCTGATTGAAGAGAATTTCAACGATGAGTTGGAACAGGCTATGAGGGATCCTATTCTTTTTGGAGATTTCAGGATGGCACTGAATGAAGGAGAGCCTCGTATTTATGAAGATATACAAGCCTATGATGTGGCAAAAAATCTCTTTCAG
Seq A exon
GAGATTTTGGAGGAATATAATGAGGTTAATCTTAAAATGAATCTAGTTCTTTTTGATGATGCTTTGGAACATTTAATCCATGTGTATCGCATCATACGGATGGATCGTGGCCATGCCCTACTCATAGGAGTTGGAGGCTCAGGAAAGCAGTCTCTTACGAGATTGGCTGCCTTTACAGCTGGATGTGAG
Seq C2 exon
GTATTTGAGATCATCTTGACTCGGGGATATAGGGAAAATAACTTCCGAGAAGACCTGAAAAGCTTGTACCAGAAGCTTGGTATTGAGAATAAGTCAATAGTCTTCTTGTTTACAGATGGCCATGTAGCAGAAGAGAGTTTCTTGGAGCTCATCAATAACATGTTAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE6
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(21.3=90.5)
C2:
PF127802=AAA_8=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGGCTATGAGGGATCCT
R:
ACTCTCTTCTGCTACATGGCCA
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]