MmuEX6021058 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125284184-125286279:+
Coord C1 exon
chr5:125284184-125284351
Coord A exon
chr5:125285002-125285190
Coord C2 exon
chr5:125286108-125286279
Length
189 bp
Sequences
Splice sites
3' ss Seq
CAGGAATGCTCTCCACTCAGGAA
3' ss Score
4.22
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGCAAAATCACATAGGGAACTTGGTGACGGAGCATTTTAACGATGACTTCGAGATGGTGATGAGGGATCCCATCCTGTTCGGGGACTTCCGGTTGGCTCTGCAAGAGGGGGAGCCACGCATTTATGAAGACATCCAGGACTACGAGGCCGCCAAGGCACTGTTTGAG
Seq A exon
GAAATCCTCGAGGAGTACAACGAAGTCAACACCAAGATGAACCTGGTGCTGTTTGACGACGCGCTGGAACACCTGACCCGCGTGCACCGCATCATTCGGATGGACCGAGGCCACGCATTGCTGGTGGGTGTGGGTGGCTCCGGGAAGCAGTCGTTGGCTAGGCTGGCGGCCTTCACCGCAGGCTGTGAG
Seq C2 exon
GTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAATAACTTCCGGGATGATCTGAAGAACCTGTACATGAAGCTGGGCCTGGAGAACAAGATGATGATCTTCCTGTTCACAGACGCGCACGTGGCCGAGGAGGGCTTCCTGGAACTCATCAACAACATGCTGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'50-53,'50-52,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(21.3=90.5)
C2:
PF127802=AAA_8=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTTGGTGACGGAGCATT
R:
TCATCTTGTTCTCCAGGCCCA
Band lengths:
249-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: