HsaEX6069942 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123879634-123887313:+
Coord C1 exon
chr12:123879634-123879801
Coord A exon
chr12:123881625-123881813
Coord C2 exon
chr12:123887142-123887313
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTAAATGCAGGAA
3' ss Score
9.39
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAG
Seq A exon
GAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTCTCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAG
Seq C2 exon
GTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAGTTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATTGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'65-66,'65-65,68-66
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(21.3=90.5)
C2:
PF127802=AAA_8=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGACGTGGAGGTGGTGA
R:
TGGGCATCCGTGAACAGAAAG
Band lengths:
250-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains