BtaEX6072238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54080700-54085308:-
Coord C1 exon
chr17:54085111-54085308
Coord A exon
chr17:54084259-54084420
Coord C2 exon
chr17:54080700-54080874
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCCCTTTCCTCAGCTC
3' ss Score
9.9
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GAACTAATCAGATGATCCCGGCAGAAAATATAGAAGATCTGGTAGAACATGTTGTTTTGGTCCACGAATCCGTGGGTGAATTCAGCAAACAATTCCTACAGAAACTGAGGCGCTGCAACTATGTGACTCCGAAGAACTACCTGGATTTTATTAACACGTATTCAAAATTACTGGATGAGAAAACTCAGTATAATATAG
Seq A exon
CTCAGTGCAAGCGTCTGGAGGGAGGCCTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGATGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCGGCTGCTTGCGAGGCCCTACTGGAGGAGATCGCCACAAATACAGCCATAG
Seq C2 exon
CGGAGGAAAAGAAGAAGCTGGCAGAGGAAAAAGCCATGGAGATAGAGGAGCAGAACAAGATTATCGCGGTGGAGAAGACAGAGGCTGAGACTGCCCTGGCTGAGGTCATGCCCATCCTGGAGGCTGCCAAGCTGGAGCTGCAGAAGCTGGACAAGTCGGATGTGACCGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'56-61,'56-60,57-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(21.3=85.1)
A:
PF127772=MT=PU(15.1=92.7)
C2:
PF127772=MT=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGAGGCGCTGCAACTA
R:
CGACTTGTCCAGCTTCTGCAG
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]