DreEX0003642 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27755361-27757367:+
Coord C1 exon
chr5:27755361-27755558
Coord A exon
chr5:27756228-27756389
Coord C2 exon
chr5:27757193-27757367
Length
162 bp
Sequences
Splice sites
3' ss Seq
GACCTGTTTGTACTTTCCAGCAC
3' ss Score
7.64
5' ss Seq
TCGGTTAGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GTGAGAGTCCGATGATCCCAAAGAGCCATTCTGAGGCAGTGATTGATCACGTGTGCATGGTACACAGCTCGGTAGGCGACTATAGTAAACTGTTCCTGCAAACTCTACGTCGTAGCAACTACGTCACCCCTAAAAACTACCTGGACTTCATTAACACCTACTCCAACCTACTGGAGGACAAAGATAAATACATACTGG
Seq A exon
CACAATATAAACGCCTCGAAGGGGGTTTGGATAAGCTGAAGGAGGCGAGTGGGCAGCTAGCAGAGCTCAACGTCAAGCTTGACGAGCAGAAAGTTGTGCTGGCAGAGAAGACTTCAGCCTGTGAGATCCTTCTAGAAGAGATCTGCGCTAACACCGCTGTCG
Seq C2 exon
CGGAAGAGAAGAAAACCCTGGCGGAGGAGAAGGCTAAAGAAATAGAGGAGCAGAATAAGGTGATAGTGGTGGAGAAGAAGGATGCTGAGAGCTCTTTAGCTGAAGCTCTTCCTGCTTTAGAGGCCGCTCGCATCGCCCTGCAAGACCTAGACAAAAGTGATGTCACAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'60-58,'60-57,61-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(21.3=85.1)
A:
PF127772=MT=PU(15.1=92.7)
C2:
PF127772=MT=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCGGTAGGCGACTATAGT
R:
GGCCTCTAAAGCAGGAAGAGC
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]